{
  "_id": "6a0f6d55acfb0bcc41c5eb96",
  "Package": "psborrow",
  "Title": "Bayesian Dynamic Borrowing with Propensity Score",
  "Version": "0.2.4",
  "Authors@R": "c(\nperson(given = \"Isaac\", family = \"Gravestock\", role = c(\"cre\", \"ctb\"), email = \"isaac.gravestock@roche.com\"),\nperson(given = \"Craig\", family = \"Gower-Page\", role = c(\"aut\"), email = \"craig.gower-page@roche.com\"),\nperson(given = \"Matt\", family = \"Secrest\", role = c(\"ctb\"), email = \"secrestm@gene.com\"),\nperson(given = \"Yichen\", family = \"Lu\", role = c(\"aut\")),\nperson(given = \"Aijing\", family = \"Lin\", role = c(\"aut\")),\nperson(\"F. Hoffmann-La Roche AG\", role = c(\"cph\", \"fnd\"))\n)",
  "Description": "A tool which aims to help evaluate the effect of external\nborrowing using an integrated approach described in Lewis et\nal., (2019) <doi:10.1080/19466315.2018.1497533> that combines\npropensity score and Bayesian dynamic borrowing methods.",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.2",
  "VignetteBuilder": "R.rsp",
  "Collate": "'zzz.R' 'add_cov.R' 'add_time.R' 'add_mcmc.R' 'apply_mcmc.R'\n'simu_cov.R' 'match_cov.R' 'simu_time.R' 'run_mcmc.R'\n'get_summary.R' 'utils.R'",
  "Config/testthat/edition": "3",
  "License": "Apache License (>= 2)",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-21 08:06:40 UTC",
    "User": "root"
  },
  "Author": "Isaac Gravestock [cre, ctb], Craig Gower-Page [aut], Matt\nSecrest [ctb], Yichen Lu [aut], Aijing Lin [aut], F.\nHoffmann-La Roche AG [cph, fnd]",
  "Maintainer": "Isaac Gravestock <isaac.gravestock@roche.com>",
  "Config/pak/sysreqs": "jags",
  "Repository": "https://gravesti.r-universe.dev",
  "Date/Publication": "2025-08-22 14:50:02 UTC",
  "RemoteUrl": "https://github.com/cran/psborrow",
  "RemoteRef": "HEAD",
  "RemoteSha": "d2692171b48937fb9c865a9ae80f67b9af09d6b3",
  "MD5sum": "48e1c57395d5eb62099ad41937ffaa17",
  "_user": "gravesti",
  "_type": "src",
  "_file": "psborrow_0.2.4.tar.gz",
  "_fileid": "b29cb6e8d6987fb6b64b9dfd18da936c0c3de46d352ca9da19fd761d757cfc78",
  "_filesize": 384163,
  "_sha256": "b29cb6e8d6987fb6b64b9dfd18da936c0c3de46d352ca9da19fd761d757cfc78",
  "_created": "2026-05-21T08:06:40.000Z",
  "_published": "2026-05-21T20:38:45.307Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77263970656,
      "time": 260,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7130535664"
    },
    {
      "job": 77263970394,
      "time": 266,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7130537942"
    },
    {
      "job": 77263970593,
      "time": 257,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7130523264"
    },
    {
      "job": 77263971333,
      "time": 208,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7130510734"
    },
    {
      "job": 77263969671,
      "time": 234,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7130449907"
    },
    {
      "job": 77263969717,
      "time": 130,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7146644371"
    },
    {
      "job": 77263970256,
      "time": 253,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7130533141"
    },
    {
      "job": 77263970306,
      "time": 252,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7130532708"
    },
    {
      "job": 77263970414,
      "time": 278,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7130541351"
    }
  ],
  "_buildurl": "https://github.com/r-universe/gravesti/actions/runs/26213511532",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/psborrow",
  "_commit": {
    "id": "d2692171b48937fb9c865a9ae80f67b9af09d6b3",
    "author": "Isaac Gravestock <isaac.gravestock@roche.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.2.4\n",
    "time": 1755874202
  },
  "_maintainer": {
    "name": "Isaac Gravestock",
    "email": "isaac.gravestock@roche.com",
    "login": "gravesti",
    "description": "Statistical Engineering @ Roche",
    "uuid": 83659704
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "rjags",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "MatchIt",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "futile.logger",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "Matrix",
      "role": "Suggests"
    },
    {
      "package": "assertthat",
      "role": "Suggests"
    },
    {
      "package": "pkgload",
      "role": "Suggests"
    },
    {
      "package": "flexsurv",
      "role": "Suggests"
    },
    {
      "package": "R.rsp",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-26",
      "n": 1
    },
    {
      "week": "2025-34",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.2.3",
      "date": "2025-06-23"
    },
    {
      "name": "0.2.4",
      "date": "2025-08-22"
    }
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "gravesti",
      "count": 4,
      "uuid": 83659704
    },
    {
      "user": "aijinglina21",
      "count": 1,
      "uuid": 80849779
    }
  ],
  "_userbio": {
    "uuid": 83659704,
    "type": "user",
    "name": "Isaac Gravestock",
    "description": "Statistical Engineering @ Roche"
  },
  "_downloads": {
    "count": 554,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/psborrow"
  },
  "_searchresults": 4,
  "_topics": [
    "jags",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/psborrow.html",
    "manual.pdf"
  ],
  "_realowner": "gravesti",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2021-06-04"
    },
    {
      "version": "0.2.0",
      "date": "2022-05-16"
    },
    {
      "version": "0.2.1",
      "date": "2023-03-03"
    },
    {
      "version": "0.2.2",
      "date": "2025-02-19"
    },
    {
      "version": "0.2.3",
      "date": "2025-06-23"
    },
    {
      "version": "0.2.4",
      "date": "2025-08-22"
    }
  ],
  "_exports": [
    "apply_mcmc",
    "extract_samples",
    "get_summary",
    "match_cov",
    "plot_bias",
    "plot_hr",
    "plot_mse",
    "plot_power",
    "plot_type1error",
    "run_mcmc",
    "run_mcmc_p",
    "set_clin",
    "set_cov",
    "set_event",
    "set_n",
    "set_prior",
    "simu_cov",
    "simu_time"
  ],
  "_help": [
    {
      "page": "dot-clinClass-class",
      "title": "S4 Class for specifying parameters for enrollment time, drop-out pattern and analysis start time",
      "topics": [
        ".clinClass",
        ".clinClass-class"
      ]
    },
    {
      "page": "dot-covClass-class",
      "title": "S4 Class for setting up covariates",
      "topics": [
        ".covClass",
        ".covClass-class"
      ]
    },
    {
      "page": "dot-eventClass-class",
      "title": "S4 Class for setting parameters for time-to-events",
      "topics": [
        ".eventClass",
        ".eventClass-class"
      ]
    },
    {
      "page": "dot-priorClass-class",
      "title": "S4 Class for specifying prior distributions and predictors for MCMC methods",
      "topics": [
        ".priorClass",
        ".priorClass-class"
      ]
    },
    {
      "page": "apply_mcmc",
      "title": "Fit Dynamic Borrowing MCMC Model",
      "topics": [
        "apply_mcmc",
        "extract_samples",
        "summary.apply_mcmc"
      ]
    },
    {
      "page": "c-.covClass-method",
      "title": "Concatenate multiple '.covClasss' classes",
      "topics": [
        "c,.covClass-method"
      ]
    },
    {
      "page": "c-.priorClass-method",
      "title": "Concatenate multiple '.priorClasss' class",
      "topics": [
        "c,.priorClass-method"
      ]
    },
    {
      "page": "fix_col_names",
      "title": "Fix Column Names",
      "topics": [
        "fix_col_names"
      ]
    },
    {
      "page": "get_summary",
      "title": "Generate summary statistics of a simulation scenario",
      "topics": [
        "get_summary"
      ]
    },
    {
      "page": "is_psborrow_dev",
      "title": "Check if user is in psborrow development environment",
      "topics": [
        "is_psborrow_dev"
      ]
    },
    {
      "page": "match_cov",
      "title": "Match",
      "topics": [
        "match_cov"
      ]
    },
    {
      "page": "plot_bias",
      "title": "Plot bias",
      "topics": [
        "plot_bias"
      ]
    },
    {
      "page": "plot_hr",
      "title": "Plot mean posterior hazard ratio between treatment and control",
      "topics": [
        "plot_hr"
      ]
    },
    {
      "page": "plot_mse",
      "title": "Plot mean squared error (MSE)",
      "topics": [
        "plot_mse"
      ]
    },
    {
      "page": "plot_power",
      "title": "Plot power",
      "topics": [
        "plot_power"
      ]
    },
    {
      "page": "plot_type1error",
      "title": "Plot type 1 error",
      "topics": [
        "plot_type1error"
      ]
    },
    {
      "page": "ps_message",
      "title": "Conditional Message",
      "topics": [
        "ps_message"
      ]
    },
    {
      "page": "rej_est",
      "title": "Generate summary statistics for the MCMC chains",
      "topics": [
        "rej_est"
      ]
    },
    {
      "page": "run_mcmc",
      "title": "Run MCMC for multiple scenarios with provided data",
      "topics": [
        "run_mcmc"
      ]
    },
    {
      "page": "run_mcmc_p",
      "title": "Run MCMC for multiple scenarios with provided data with parallel processing",
      "topics": [
        "run_mcmc_p"
      ]
    },
    {
      "page": "set_clin",
      "title": "Specify parameters for enrollment time, drop-out pattern and analysis start time",
      "topics": [
        "set_clin"
      ]
    },
    {
      "page": "set_cov",
      "title": "Set up covariates",
      "topics": [
        "set_cov"
      ]
    },
    {
      "page": "set_event",
      "title": "Set up time-to-events",
      "topics": [
        "set_event"
      ]
    },
    {
      "page": "set_n",
      "title": "Simulate external trial indicator and treatment arm indicator",
      "topics": [
        "set_n"
      ]
    },
    {
      "page": "set_prior",
      "title": "Specify prior distributions and predictors for MCMC methods",
      "topics": [
        "set_prior"
      ]
    },
    {
      "page": "simu_cov",
      "title": "Simulate covariates",
      "topics": [
        "simu_cov",
        "simu_cov,matrix-method"
      ]
    },
    {
      "page": "simu_time",
      "title": "Simulate time-to-events for multiple scenarios",
      "topics": [
        "simu_time"
      ]
    }
  ],
  "_rundeps": [
    "backports",
    "chk",
    "cli",
    "coda",
    "codetools",
    "cpp11",
    "data.table",
    "doParallel",
    "dplyr",
    "farver",
    "foreach",
    "formatR",
    "futile.logger",
    "futile.options",
    "generics",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "iterators",
    "labeling",
    "lambda.r",
    "lattice",
    "lifecycle",
    "magrittr",
    "MatchIt",
    "Matrix",
    "mvtnorm",
    "pillar",
    "pkgconfig",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppProgress",
    "rjags",
    "rlang",
    "S7",
    "scales",
    "survival",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libjags",
      "package": "jags",
      "headers": "jags",
      "source": "jags",
      "version": "4.3.2-2.2404.0",
      "name": "jags",
      "homepage": "https://mcmc-jags.sourceforge.io",
      "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary\nJAGS is Just Another Gibbs Sampler.  It is a program for analysis of\nBayesian hierarchical models using Markov Chain Monte Carlo (MCMC)\nsimulation not wholly unlike BUGS.\n\nJAGS was written with three aims in mind:\n* To have an engine for the BUGS language that runs on Unix\n* To be extensible, allowing users to write their own functions,\ndistributions and samplers.\n* To be a plaftorm for experimentation with ideas in Bayesian modelling\n\nThis package contains the 'jags' binary as well as the associated\nshared library modules loaded by the binary."
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "analysis.html.asis",
      "filename": "analysis.html",
      "title": "Analysing data with psborrow",
      "engine": "R.rsp::asis",
      "headings": [],
      "created": "2022-05-16 16:40:02",
      "modified": "2022-05-16 16:40:02",
      "commits": 1
    },
    {
      "source": "user_guide.html.asis",
      "filename": "user_guide.html",
      "title": "User Guide: Dynamic Borrowing with psborrow",
      "engine": "R.rsp::asis",
      "headings": [],
      "created": "2022-05-16 16:40:02",
      "modified": "2022-05-16 16:40:02",
      "commits": 1
    }
  ],
  "_score": 2.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "psborrow",
  "_universes": [
    "gravesti"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.4",
      "date": "2026-05-21T08:09:16.000Z",
      "distro": "noble",
      "commit": "d2692171b48937fb9c865a9ae80f67b9af09d6b3",
      "fileid": "3411d2de4e086f14bfd768d67540e5920ee25cb8512e07ec77eeaa5ead599e3c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gravesti/actions/runs/26213511532"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.4",
      "date": "2026-05-21T08:09:17.000Z",
      "distro": "noble",
      "commit": "d2692171b48937fb9c865a9ae80f67b9af09d6b3",
      "fileid": "440fdf772ae410d91eb43aca42b5bcedaf284f18cad4a79af4fdb2bf82bb2b01",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gravesti/actions/runs/26213511532"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.4",
      "date": "2026-05-21T08:09:07.000Z",
      "commit": "d2692171b48937fb9c865a9ae80f67b9af09d6b3",
      "fileid": "45a231dce80602ad84bb327744a11852f60b9066b595a67301649715d5778bc8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gravesti/actions/runs/26213511532"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.4",
      "date": "2026-05-21T08:08:52.000Z",
      "commit": "d2692171b48937fb9c865a9ae80f67b9af09d6b3",
      "fileid": "66cb54edcba8b848374490d948d0916038bda1d5ae4c862912f57a153571b993",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gravesti/actions/runs/26213511532"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.4",
      "date": "2026-05-21T20:38:23.000Z",
      "commit": "d2692171b48937fb9c865a9ae80f67b9af09d6b3",
      "fileid": "756b086b9ace50f3df1f2f83a1b8db863af2ee4d95e480bf718fa6147cc0edad",
      "status": "success",
      "buildurl": "https://github.com/r-universe/gravesti/actions/runs/26213511532"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.4",
      "date": "2026-05-21T08:08:22.000Z",
      "commit": "d2692171b48937fb9c865a9ae80f67b9af09d6b3",
      "fileid": "85681e1950768bc3ab586cd416a38b955844037a38ebc67cf4a73579bac0cb62",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gravesti/actions/runs/26213511532"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.4",
      "date": "2026-05-21T08:08:32.000Z",
      "commit": "d2692171b48937fb9c865a9ae80f67b9af09d6b3",
      "fileid": "6cd4ef880d8ae78b49dcdee38a08807822d3695b9b8bec35f93d49d1eb2db4a3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gravesti/actions/runs/26213511532"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2.4",
      "date": "2026-05-21T08:08:15.000Z",
      "commit": "d2692171b48937fb9c865a9ae80f67b9af09d6b3",
      "fileid": "8027bf7d44f89c9cf7aff2e8af14bdfe3aa06825de2199771fdbf7dedc482eaa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gravesti/actions/runs/26213511532"
    }
  ]
}